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| GenBank Identifier | RefSeq Acc. | Name |
| 57977268 | NC_004778.3 | Choristoneura fumiferana MNPV |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21184 | + | 2272 | 90 | 22 | -21.4 | NP_848317 | 5' arm 3' arm | ||
| 21185 | + | 4029 | 87 | 22 | -31.2 | NP_848320 | 5' arm 3' arm | ||
| 21274 | - | 4117 | 90 | 21 | -22.6 | NP_848320 | 5' arm 3' arm | ||
| 21275 | - | 4711 | 88 | 20 | -26.1 | NP_848321 | 5' arm 3' arm | ||
| 21186 | + | 6762 | 88 | 23 | -28.2 | NP_848324 | 5' arm 3' arm | ||
| 21276 | - | 7361 | 89 | 23.5 | -21.5 | NP_848324 | 5' arm 3' arm | ||
| 21187 | + | 7549 | 90 | 21 | -21.5 | NP_848325 | 5' arm 3' arm | ||
| 21188 | + | 8994 | 90 | 22 | -24.3 | NP_848326 | 5' arm 3' arm | ||
| 21277 | - | 8843 | 89 | 19.5 | -24.1 | NP_848326 | 5' arm 3' arm | ||
| 21189 | + | 9441 | 90 | 21.5 | -25.4 | NP_848326 | 5' arm 3' arm | ||
| 21278 | - | 9923 | 90 | 21.5 | -20.1 | NP_848327 | 5' arm 3' arm | ||
| 21190 | + | 10240 | 87 | 19 | -21.4 | NP_848327 | 5' arm 3' arm | ||
| 21191 | + | 12308 | 89 | 20 | -22.8 | NP_848330 | 5' arm 3' arm | ||
| 21193 | + | 14740 | 90 | 19 | -22.5 | NP_848332 | 5' arm 3' arm | ||
| 21192 | + | 13961 | 88 | 22.5 | -20.7 | NP_848332 | 5' arm 3' arm | ||
| 21279 | - | 14295 | 85 | 21 | -24.3 | NP_848332 | 5' arm 3' arm | ||
| 21194 | + | 16327 | 89 | 22.5 | -26.4 | NP_848333 | 5' arm 3' arm | ||
| 21281 | - | 16061 | 87 | 20 | -20.2 | NP_848333 | 5' arm 3' arm | ||
| 21280 | - | 15466 | 90 | 24 | -25.6 | NP_848333 | 5' arm 3' arm | ||
| 21282 | - | 17474 | 90 | 23 | -22.2 | NP_848334 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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