miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21227	+	59550	89	20.5	-20.2	NP_848381		5' arm      3' arm
21281	-	16061	87	20	-20.2	NP_848333		5' arm      3' arm
21349	-	112678	90	21.5	-20.4	NP_848441		5' arm      3' arm
21334	-	91442	89	21.5	-20.4	NP_848415		5' arm      3' arm
21263	+	113063	89	21.5	-20.4	NP_848442		5' arm      3' arm
21351	-	122809	90	20.5	-20.5			5' arm      3' arm
21328	-	77246	90	20.5	-20.6	NP_848398		5' arm      3' arm
21327	-	75295	80	21	-20.6	NP_848398		5' arm      3' arm
21313	-	47823	90	19	-20.7	NP_848370		5' arm      3' arm
21192	+	13961	88	22.5	-20.7	NP_848332		5' arm      3' arm
21343	-	110321	89	20	-20.8	NP_848439		5' arm      3' arm
21316	-	58095	90	21.5	-20.8	NP_848377		5' arm      3' arm
21340	-	106434	89	21.5	-20.8	NP_848435		5' arm      3' arm
21305	-	35742	87	20	-20.81	NP_848356		5' arm      3' arm
21267	+	121543	89	19.5	-20.9	NP_848452		5' arm      3' arm
21253	+	96632	90	19.5	-20.9	NP_848423		5' arm      3' arm
21251	+	95335	88	22.5	-20.9	NP_848421		5' arm      3' arm
21301	-	33709	90	21.5	-20.9	NP_848354		5' arm      3' arm
21283	-	19776	89	19.5	-21			5' arm      3' arm
21218	+	45497	89	19	-21	NP_848367		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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