miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17198 - 39036 89 26 -21.6 NP_705675 5' arm      3' arm
17197 - 38679 88 22 -26.3 NP_705675 5' arm      3' arm
17196 - 38511 82 19 -19.9 NP_705675 5' arm      3' arm
17195 - 38246 90 20.5 -21.6 NP_705675 5' arm      3' arm
17194 - 37934 90 21.5 -29.8 NP_705675 5' arm      3' arm
17193 - 37823 89 20 -23.3 NP_705675 5' arm      3' arm
17192 - 37548 85 19.5 -27 NP_705675 5' arm      3' arm
17191 - 36216 86 22 -25.7 NP_705674 5' arm      3' arm
17190 - 35128 89 19.5 -25.1 NP_705672 5' arm      3' arm
17189 - 33427 85 20 -25 YP_022744 5' arm      3' arm
17188 - 33136 85 19.5 -22.9 NP_705671 5' arm      3' arm
17187 - 32829 90 22 -28.8 NP_705671 5' arm      3' arm
17186 - 32203 85 20.5 -24.7 NP_705669 5' arm      3' arm
17185 - 31769 90 20.5 -21.4 NP_705669 5' arm      3' arm
17184 - 30964 90 20.5 -20.8 NP_705668 5' arm      3' arm
17183 - 30691 85 20 -24.6 NP_705668 5' arm      3' arm
17182 - 30442 90 22 -23.6 NP_705668 5' arm      3' arm
17181 - 30027 90 21.5 -28.2 NP_705668 5' arm      3' arm
17180 - 29206 88 19 -23.2 NP_705666 5' arm      3' arm
17179 - 28875 85 20.5 -21 NP_705665 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.