miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17069 + 31941 89 19 -20.1 NP_705669 5' arm      3' arm
17196 - 38511 82 19 -19.9 NP_705675 5' arm      3' arm
17171 - 26343 89 19 -21.4 NP_705661 5' arm      3' arm
17174 - 27260 89 19 -29.2 NP_705663 5' arm      3' arm
17216 - 46227 88 19 -25.7 NP_705686 5' arm      3' arm
17045 + 22000 90 19 -20.9 5' arm      3' arm
17190 - 35128 89 19.5 -25.1 NP_705672 5' arm      3' arm
17188 - 33136 85 19.5 -22.9 NP_705671 5' arm      3' arm
17019 + 9747 89 19.5 -22.3 NP_705640 5' arm      3' arm
17095 + 42286 88 19.5 -22.3 NP_705681 5' arm      3' arm
17012 + 8097 89 19.5 -20.7 NP_705638 5' arm      3' arm
17091 + 41341 88 19.5 -27.6 NP_705681 5' arm      3' arm
17214 - 45208 90 19.5 -20.9 NP_705685 5' arm      3' arm
17086 + 39104 90 19.5 -21.7 NP_705675 5' arm      3' arm
17175 - 28039 86 19.5 -22.4 NP_705664 5' arm      3' arm
17049 + 23026 88 19.5 -23.2 NP_705657 5' arm      3' arm
17160 - 21751 90 19.5 -20.3 NP_705654 5' arm      3' arm
17005 + 5417 89 19.5 -23.5 NP_705635 5' arm      3' arm
17008 + 6297 87 19.5 -23.8 NP_705636 5' arm      3' arm
17010 + 7563 89 19.5 -28.3 NP_705638 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.