miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17117 - 5001 88 23.5 -22.7 NP_705634 5' arm      3' arm
16990 + 96 87 23.5 -21.5 NP_705629 5' arm      3' arm
17200 - 40159 87 23.5 -21 NP_705679 5' arm      3' arm
17073 + 32822 90 23 -23.42 NP_705671 5' arm      3' arm
17154 - 18364 88 23 -24.1 NP_705647 5' arm      3' arm
16993 + 901 90 23 -25.6 5' arm      3' arm
17215 - 45814 83 23 -23.5 NP_705685 5' arm      3' arm
17169 - 25038 90 23 -28.6 NP_705659 5' arm      3' arm
17137 - 11855 90 23 -32.4 NP_705642 5' arm      3' arm
17034 + 15978 87 23 -19.7 NP_705645 5' arm      3' arm
17148 - 15588 89 23 -19.9 NP_705644 5' arm      3' arm
17017 + 9180 88 23 -21.3 NP_705640 5' arm      3' arm
17199 - 39303 89 23 -32.8 NP_705675 5' arm      3' arm
17053 + 23741 90 23 -22.6 NP_705657 5' arm      3' arm
17066 + 29668 88 23 -29.2 5' arm      3' arm
17060 + 27493 90 23 -30.9 NP_705664 5' arm      3' arm
17047 + 22576 88 23 -19.8 NP_705657 5' arm      3' arm
17153 - 17725 90 23 -29.3 NP_705646 5' arm      3' arm
17082 + 37572 90 23 -28.4 NP_705675 5' arm      3' arm
17217 - 46806 90 23 -21.9 NP_705687 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.