miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17191 - 36216 86 22 -25.7 NP_705674 5' arm      3' arm
17203 - 40908 90 20 -19.9 NP_705681 5' arm      3' arm
17198 - 39036 89 26 -21.6 NP_705675 5' arm      3' arm
17215 - 45814 83 23 -23.5 NP_705685 5' arm      3' arm
17184 - 30964 90 20.5 -20.8 NP_705668 5' arm      3' arm
17190 - 35128 89 19.5 -25.1 NP_705672 5' arm      3' arm
17205 - 41929 87 20.5 -33 NP_705681 5' arm      3' arm
17217 - 46806 90 23 -21.9 NP_705687 5' arm      3' arm
17192 - 37548 85 19.5 -27 NP_705675 5' arm      3' arm
17213 - 45103 90 24 -30.8 NP_705685 5' arm      3' arm
17204 - 41648 89 20 -29.3 NP_705681 5' arm      3' arm
17194 - 37934 90 21.5 -29.8 NP_705675 5' arm      3' arm
17199 - 39303 89 23 -32.8 NP_705675 5' arm      3' arm
17208 - 43185 90 24 -22.5 NP_705683 5' arm      3' arm
17218 - 46920 89 21.5 -24.1 NP_705687 5' arm      3' arm
17212 - 44895 90 22.5 -23.7 NP_705685 5' arm      3' arm
17179 - 28875 85 20.5 -21 NP_705665 5' arm      3' arm
17189 - 33427 85 20 -25 YP_022744 5' arm      3' arm
17181 - 30027 90 21.5 -28.2 NP_705668 5' arm      3' arm
17196 - 38511 82 19 -19.9 NP_705675 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.