miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16991 + 238 90 22 -21.1 NP_705629 5' arm      3' arm
17004 + 4201 90 22.5 -19.5 YP_022740 5' arm      3' arm
16993 + 901 90 23 -25.6 5' arm      3' arm
17003 + 3928 86 23.5 -28.2 YP_022740 5' arm      3' arm
16990 + 96 87 23.5 -21.5 NP_705629 5' arm      3' arm
16998 + 2046 90 19 -22.6 NP_705631 5' arm      3' arm
17016 + 8845 90 26 -28.6 5' arm      3' arm
17024 + 11297 89 25.5 -31.8 NP_705642 5' arm      3' arm
17012 + 8097 89 19.5 -20.7 NP_705638 5' arm      3' arm
17010 + 7563 89 19.5 -28.3 NP_705638 5' arm      3' arm
17008 + 6297 87 19.5 -23.8 NP_705636 5' arm      3' arm
17005 + 5417 89 19.5 -23.5 NP_705635 5' arm      3' arm
17006 + 5531 89 20 -23.1 NP_705635 5' arm      3' arm
17014 + 8394 88 20.5 -23.6 NP_705639 5' arm      3' arm
17007 + 5694 89 21 -30.9 5' arm      3' arm
17011 + 7900 86 21.5 -22.3 NP_705638 5' arm      3' arm
17009 + 7044 89 21.5 -23.8 NP_705637 5' arm      3' arm
17013 + 8200 90 22.5 -24.7 NP_705638 5' arm      3' arm
17017 + 9180 88 23 -21.3 NP_705640 5' arm      3' arm
17015 + 8714 90 23 -22.2 NP_705639 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.