miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
23345	+	66684	87	20.5	-37.4	NP_943873		5' arm      3' arm
23454	-	36656	88	23.5	-37.3			5' arm      3' arm
23280	+	43232	80	22	-37			5' arm      3' arm
23219	+	15499	89	21.5	-36.7			5' arm      3' arm
23362	-	3282	89	21.5	-36.7			5' arm      3' arm
23437	-	30382	89	24	-36.1	NP_943809		5' arm      3' arm
23462	-	39887	89	23	-35.5	NP_943825		5' arm      3' arm
23368	-	5860	90	26.5	-34.5	NP_943786		5' arm      3' arm
23511	-	62751	87	21.5	-34.5	NP_943859		5' arm      3' arm
23236	+	23286	90	23	-34.4	NP_943806		5' arm      3' arm
23361	-	2630	88	19.5	-33.7	NP_943781		5' arm      3' arm
23480	-	46942	86	19.5	-33.4	NP_943831		5' arm      3' arm
23509	-	62003	89	22	-32.5			5' arm      3' arm
23235	+	22515	77	21	-32.5	NP_943806		5' arm      3' arm
23189	+	2773	85	21	-32.3	NP_943782		5' arm      3' arm
23483	-	48647	89	20	-32.3	NP_943835		5' arm      3' arm
23256	+	33431	90	20.5	-31.6	NP_943811		5' arm      3' arm
23244	+	26655	89	19.5	-31.3	NP_943807		5' arm      3' arm
23215	+	13668	86	20.5	-31.3			5' arm      3' arm
23463	-	40022	88	24.5	-31.3	NP_943826		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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