miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23208 + 11274 90 24.5 -28.7 NP_943790 5' arm      3' arm
23204 + 9300 88 20.5 -29.8 NP_943788 5' arm      3' arm
23194 + 5451 90 20 -24.1 NP_943786 5' arm      3' arm
23195 + 6233 88 20 -25.3 NP_943786 5' arm      3' arm
23197 + 6726 89 20 -23.8 NP_943787 5' arm      3' arm
23199 + 7347 89 20 -21.3 NP_943787 5' arm      3' arm
23202 + 8412 88 20 -26.8 NP_943787 5' arm      3' arm
23201 + 8060 88 19 -20.7 NP_943787 5' arm      3' arm
23203 + 8529 90 19 -24.3 NP_943787 5' arm      3' arm
23200 + 7746 85 21 -22.7 NP_943787 5' arm      3' arm
23196 + 6466 80 22 -22 NP_943787 5' arm      3' arm
23198 + 7189 87 23.5 -25.6 NP_943787 5' arm      3' arm
23193 + 4759 89 22 -22 NP_943786 5' arm      3' arm
23188 + 2494 88 21.5 -27.7 NP_943781 5' arm      3' arm
23189 + 2773 85 21 -32.3 NP_943782 5' arm      3' arm
23190 + 3336 87 21 -21.6 NP_943784 5' arm      3' arm
23187 + 2187 89 20.5 -23 NP_943780 5' arm      3' arm
23192 + 4385 88 20.5 -19.6 5' arm      3' arm
23186 + 572 89 20 -29.9 NP_943780 5' arm      3' arm
23185 + 350 90 19 -23.4 NP_943779 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.