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GenBank Identifier | RefSeq Acc. | Name |
38638403 | NC_005259.1 | Mycobacteriophage PG1 virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23229 | + | 20080 | 87 | 22 | -19.4 | NP_943805 | 5' arm 3' arm | ||
23233 | + | 21634 | 90 | 21 | -29.3 | NP_943806 | 5' arm 3' arm | ||
23234 | + | 21780 | 87 | 21 | -23.1 | NP_943806 | 5' arm 3' arm | ||
23235 | + | 22515 | 77 | 21 | -32.5 | NP_943806 | 5' arm 3' arm | ||
23228 | + | 19963 | 90 | 20 | -19.5 | NP_943805 | 5' arm 3' arm | ||
23230 | + | 20891 | 89 | 19.5 | -23.6 | NP_943806 | 5' arm 3' arm | ||
23231 | + | 21107 | 86 | 19.5 | -24.9 | NP_943806 | 5' arm 3' arm | ||
23217 | + | 14144 | 90 | 19.5 | -23.7 | NP_943795 | 5' arm 3' arm | ||
23223 | + | 16880 | 89 | 20 | -21.1 | NP_943799 | 5' arm 3' arm | ||
23221 | + | 16104 | 90 | 20 | -25.6 | NP_943798 | 5' arm 3' arm | ||
23215 | + | 13668 | 86 | 20.5 | -31.3 | 5' arm 3' arm | |||
23211 | + | 12000 | 87 | 20 | -25.6 | NP_943791 | 5' arm 3' arm | ||
23207 | + | 11113 | 89 | 19.5 | -19.8 | NP_943790 | 5' arm 3' arm | ||
23213 | + | 12453 | 89 | 19.5 | -21.8 | NP_943792 | 5' arm 3' arm | ||
23222 | + | 16368 | 85 | 25 | -20.9 | NP_943798 | 5' arm 3' arm | ||
23216 | + | 13979 | 86 | 23.5 | -24.5 | NP_943795 | 5' arm 3' arm | ||
23219 | + | 15499 | 89 | 21.5 | -36.7 | 5' arm 3' arm | |||
23224 | + | 17960 | 90 | 21 | -24.2 | NP_943801 | 5' arm 3' arm | ||
23220 | + | 15743 | 88 | 20.5 | -21.5 | NP_943797 | 5' arm 3' arm | ||
23226 | + | 18880 | 89 | 19 | -24.3 | NP_943803 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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