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GenBank Identifier | RefSeq Acc. | Name |
32453825 | NC_004927.1 | Halovirus HF1 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
22022 | + | 790 | 87 | 24 | -34 | 5' arm 3' arm | |||
22176 | - | 64144 | 90 | 21 | -33 | NP_861675 | 5' arm 3' arm | ||
22023 | + | 1269 | 87 | 19 | -32.5 | 5' arm 3' arm | |||
22170 | - | 60859 | 82 | 21.5 | -31.5 | NP_861672 | 5' arm 3' arm | ||
22093 | + | 69438 | 87 | 22.5 | -31.4 | NP_861681 | 5' arm 3' arm | ||
22163 | - | 57697 | 89 | 19 | -31.2 | NP_861668 | 5' arm 3' arm | ||
22190 | - | 73684 | 90 | 22.5 | -31.1 | NP_861688 | 5' arm 3' arm | ||
22157 | - | 54012 | 89 | 24.5 | -30.8 | NP_861662 | 5' arm 3' arm | ||
22099 | - | 870 | 89 | 20 | -30.7 | 5' arm 3' arm | |||
22056 | + | 31140 | 89 | 20 | -30.6 | 5' arm 3' arm | |||
22042 | + | 18655 | 88 | 22 | -30.6 | NP_861618 | 5' arm 3' arm | ||
22098 | - | 364 | 86 | 19.5 | -30.5 | 5' arm 3' arm | |||
22084 | + | 60774 | 90 | 21 | -30.1 | NP_861672 | 5' arm 3' arm | ||
22076 | + | 46250 | 88 | 23 | -29.71 | NP_861655 | 5' arm 3' arm | ||
22041 | + | 16839 | 90 | 20.5 | -29.7 | NP_861616 | 5' arm 3' arm | ||
22178 | - | 64326 | 89 | 23 | -29.6 | NP_861675 | 5' arm 3' arm | ||
22162 | - | 57390 | 90 | 21 | -29.5 | NP_861667 | 5' arm 3' arm | ||
22045 | + | 22189 | 90 | 19.5 | -29.3 | NP_861623 | 5' arm 3' arm | ||
22051 | + | 28312 | 90 | 21 | -29.2 | NP_861634 | 5' arm 3' arm | ||
22060 | + | 33363 | 89 | 22 | -29.1 | NP_861642 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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