miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
22039	+	16479	90	25	-20.31	NP_861616		5' arm      3' arm
22160	-	56884	89	24.5	-22.9	NP_861666		5' arm      3' arm
22136	-	32617	86	24.5	-19.5	NP_861642		5' arm      3' arm
22157	-	54012	89	24.5	-30.8	NP_861662		5' arm      3' arm
22022	+	790	87	24	-34			5' arm      3' arm
22095	+	70585	85	24	-24.9	NP_861682		5' arm      3' arm
22116	-	16568	90	23.5	-21.4	NP_861616		3' arm
22068	+	37674	89	23.5	-25.1	NP_861650		5' arm      3' arm
22122	-	22821	90	23.5	-20	NP_861624		5' arm      3' arm
22048	+	24174	87	23.5	-27.7	NP_861625		5' arm      3' arm
22030	+	10412	89	23.5	-21.1	NP_861607		5' arm      3' arm
22109	-	8135	88	23.5	-26.7	NP_861603		5' arm      3' arm
22172	-	61594	90	23	-26.6	NP_861672		5' arm      3' arm
22072	+	40079	89	23	-20.9	NP_861652		5' arm      3' arm
22043	+	19698	89	23	-22	NP_861619		5' arm      3' arm
22194	-	75526	89	23	-26.1	NP_861690		5' arm      3' arm
22076	+	46250	88	23	-29.71	NP_861655		5' arm      3' arm
22178	-	64326	89	23	-29.6	NP_861675		5' arm      3' arm
22142	-	37356	88	23	-23.2			5' arm      3' arm
22092	+	68925	88	23	-24.9	NP_861680		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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