miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
32453825 NC_004927.1 Halovirus HF1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22064 + 35286 88 20 -19.7 NP_861644 5' arm      3' arm
22059 + 33249 90 19.5 -22.8 NP_861642 5' arm      3' arm
22068 + 37674 89 23.5 -25.1 NP_861650 5' arm      3' arm
22067 + 37202 83 23 -21.5 5' arm      3' arm
22072 + 40079 89 23 -20.9 NP_861652 5' arm      3' arm
22069 + 38038 86 21.5 -25.7 NP_861650 5' arm      3' arm
22071 + 39809 82 21.5 -23.3 NP_861652 5' arm      3' arm
22060 + 33363 89 22 -29.1 NP_861642 5' arm      3' arm
22061 + 33757 83 22.5 -19.8 NP_861642 5' arm      3' arm
22054 + 29037 83 19 -21.6 NP_861634 5' arm      3' arm
22047 + 22892 88 19 -19.6 NP_861624 5' arm      3' arm
22048 + 24174 87 23.5 -27.7 NP_861625 5' arm      3' arm
22049 + 24458 83 20 -25.2 NP_861625 5' arm      3' arm
22050 + 25624 90 20 -24.5 NP_861626 5' arm      3' arm
22051 + 28312 90 21 -29.2 NP_861634 5' arm      3' arm
22052 + 28455 90 20.5 -20.1 NP_861634 5' arm      3' arm
22053 + 28713 85 20 -25.4 NP_861634 5' arm      3' arm
22056 + 31140 89 20 -30.6 5' arm      3' arm
22057 + 31573 77 20 -27.3 NP_861640 5' arm      3' arm
22055 + 30601 90 19.5 -24.2 NP_861639 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.