miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
23524	+	160215	90	20.5	-25.9			5' arm      3' arm
23547	-	187732	88	21	-28.7	NP_944165		5' arm      3' arm
23545	-	185497	90	21	-24.5			5' arm      3' arm
23544	-	184113	86	21	-20	NP_944157		5' arm      3' arm
23532	-	57942	90	21	-21.6	NP_943956		5' arm      3' arm
23543	-	180475	89	21	-22.1	NP_944148		5' arm      3' arm
23521	+	127551	90	21	-20.8	NP_944085		5' arm      3' arm
23536	-	100537	88	21.5	-22.3	NP_944042		5' arm      3' arm
23522	+	134442	85	22	-23.8	NP_944090		5' arm      3' arm
23520	+	49643	90	22.5	-20.9			5' arm      3' arm
23553	-	222478	89	22.5	-23.9	NP_944215		5' arm      3' arm
23550	-	204220	90	23	-19.96	NP_944201		5' arm      3' arm
23525	+	162971	88	23	-28.5	NP_944118		5' arm      3' arm
23534	-	67149	88	23	-24.8	NP_943975		5' arm      3' arm
23552	-	213239	90	23.5	-26.5	NP_944212		5' arm      3' arm
23540	-	141508	90	24	-24	NP_944095		5' arm      3' arm
23523	+	152534	86	25	-20	NP_944106		5' arm      3' arm
23535	-	87417	87	25.5	-21.9	NP_944019		5' arm      3' arm
23556	-	230926	89	27	-26.4			5' arm      3' arm
23554	-	228400	89	27	-31.8	NP_944223		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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