miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21064	-	5990	90	21	-31.1			5' arm      3' arm
21061	-	4362	85	21	-30	NP_839853		5' arm      3' arm
21053	+	20400	90	26	-28.1	NP_839874		5' arm      3' arm
21048	+	16854	90	19.5	-27.3	NP_839870		5' arm      3' arm
21046	+	10612	89	24	-27	NP_839865		5' arm      3' arm
21043	+	8934	90	20	-26.7	NP_839862		5' arm      3' arm
21050	+	18952	90	19.5	-26.3	NP_839874		5' arm      3' arm
21037	+	4209	88	20	-25.6	NP_839853		5' arm      3' arm
21045	+	9693	89	20.5	-25.6	NP_839863		5' arm      3' arm
21042	+	7727	86	25	-25.5	NP_839859		5' arm      3' arm
21052	+	20285	87	21.5	-25	NP_839874		5' arm      3' arm
21058	-	2018	82	19.5	-24.9	NP_839851		5' arm      3' arm
21057	+	28430	90	21	-24.7	NP_839887		5' arm      3' arm
21063	-	5646	88	21	-24.7	NP_839854		5' arm      3' arm
21075	-	27022	88	21.5	-24.6	NP_839887		5' arm      3' arm
21074	-	20065	88	20	-24.6	NP_839874		5' arm      3' arm
21038	+	5349	88	22	-23.9	NP_839854		5' arm      3' arm
21044	+	9583	90	22	-23.9	NP_839863		5' arm      3' arm
21071	-	18228	89	19.5	-23.6			5' arm      3' arm
21040	+	6877	89	23	-23.4	NP_839857		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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