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GenBank Identifier | RefSeq Acc. | Name |
30089981 | NC_002198.2 | Cereal yellow dwarf virus-RPS |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8592 | + | 90 | 88 | 21 | -23.8 | NP_054684 | 5' arm 3' arm | ||
8593 | + | 1751 | 90 | 19.5 | -21 | NP_054685 | 5' arm 3' arm | ||
8594 | + | 2449 | 90 | 23 | -20.6 | NP_054685 | 5' arm 3' arm | ||
8595 | + | 5108 | 89 | 21 | -23.7 | NP_054687 | 5' arm 3' arm | ||
8596 | + | 5214 | 90 | 21 | -24.2 | NP_054687 | 5' arm 3' arm | ||
8597 | - | 415 | 90 | 21 | -24.3 | NP_054685 | 5' arm 3' arm | ||
8598 | - | 2392 | 89 | 19 | -19.8 | NP_054685 | 5' arm 3' arm | ||
8599 | - | 4316 | 89 | 21.5 | -26.9 | NP_054687 | 5' arm 3' arm | ||
8600 | - | 4867 | 89 | 20 | -27.4 | NP_054687 | 5' arm 3' arm | ||
8601 | - | 5302 | 86 | 20 | -24.2 | NP_054687 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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