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| GenBank Identifier | RefSeq Acc. | Name |
| 39163648 | NC_005287.1 | Johnsongrass chlorotic stripe mosaic virus |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24987 | + | 206 | 90 | 24.5 | -30.3 | NP_945129 | 5' arm 3' arm | ||
| 24988 | + | 784 | 90 | 20 | -30.8 | NP_945128 | 5' arm 3' arm | ||
| 24989 | + | 876 | 90 | 19.5 | -21.17 | NP_945128 | 5' arm 3' arm | ||
| 24990 | + | 1360 | 90 | 19.5 | -32.1 | NP_945128 | 5' arm 3' arm | ||
| 24991 | + | 2534 | 90 | 19.5 | -22.3 | NP_945130 | 5' arm 3' arm | ||
| 24992 | + | 2940 | 89 | 20.5 | -23.56 | NP_945130 | 5' arm 3' arm | ||
| 24993 | + | 3410 | 87 | 20.5 | -24.9 | NP_945130 | 5' arm 3' arm | ||
| 24994 | - | 1432 | 88 | 19 | -25.7 | NP_945128 | 5' arm 3' arm | ||
| 24995 | - | 2409 | 84 | 20 | -25.8 | NP_945128 | 5' arm 3' arm | ||
| 24996 | - | 4124 | 85 | 20.5 | -20.3 | NP_945131 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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