miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31565	-	163509	88	22	-27.8			5' arm      3' arm
31546	+	152186	75	21.5	-27.7	YP_195242		5' arm      3' arm
31537	+	40830	87	19	-27.7	YP_195118		5' arm      3' arm
31545	+	123582	87	23.5	-27.4	YP_195203		5' arm      3' arm
31540	+	81599	69	23	-27.1	YP_195144		5' arm      3' arm
31542	+	116758	90	19	-27	YP_195190		5' arm      3' arm
31554	-	23411	90	21.5	-26.7			5' arm      3' arm
31536	+	26236	85	19.5	-26.3	YP_195111		5' arm      3' arm
31561	-	78590	89	24	-25.3	YP_195141		5' arm      3' arm
31557	-	24247	89	21.5	-24.8			5' arm      3' arm
31556	-	24130	90	22.5	-24.7			5' arm      3' arm
31544	+	120693	81	19	-24	YP_195198		5' arm      3' arm
31539	+	80245	90	22	-24	YP_195142		5' arm      3' arm
31533	+	21684	90	20.5	-23.8	YP_195105		5' arm      3' arm
31552	-	22325	90	19.5	-23.7			5' arm      3' arm
31553	-	22419	87	22	-23.4	YP_195106		5' arm      3' arm
31541	+	82677	90	23	-23	YP_195146		5' arm      3' arm
31559	-	58400	90	22.5	-22.3	YP_195122		5' arm      3' arm
31549	-	21727	85	19.5	-22.2	YP_195105		5' arm      3' arm
31551	-	22097	90	22	-22.2			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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