miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31542	+	116758	90	19	-27	YP_195190		5' arm      3' arm
31544	+	120693	81	19	-24	YP_195198		5' arm      3' arm
31537	+	40830	87	19	-27.7	YP_195118		5' arm      3' arm
31548	+	193198	90	19	-21.9	YP_195267		5' arm      3' arm
31535	+	23884	87	19.5	-20.6	YP_195108		5' arm      3' arm
31536	+	26236	85	19.5	-26.3	YP_195111		5' arm      3' arm
31549	-	21727	85	19.5	-22.2	YP_195105		5' arm      3' arm
31552	-	22325	90	19.5	-23.7			5' arm      3' arm
31532	+	17361	87	19.5	-19.9	YP_195090		5' arm      3' arm
31534	+	23561	89	20	-19.6			5' arm      3' arm
31531	+	11320	86	20	-19.7			5' arm      3' arm
31562	-	114181	87	20.5	-21.9	YP_195186		5' arm      3' arm
31543	+	118479	90	20.5	-21.7	YP_195195		5' arm      3' arm
31563	-	146092	89	20.5	-20.8	YP_195234		5' arm      3' arm
31533	+	21684	90	20.5	-23.8	YP_195105		5' arm      3' arm
31555	-	23585	89	21	-20.4			5' arm      3' arm
31564	-	156950	90	21	-21	YP_195243		5' arm      3' arm
31546	+	152186	75	21.5	-27.7	YP_195242		5' arm      3' arm
31557	-	24247	89	21.5	-24.8			5' arm      3' arm
31554	-	23411	90	21.5	-26.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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