miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
34610128 NC_005091.1 Burkholderia cepacia phage BcepNazgul

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22690 - 26102 89 26 -32.2 5' arm      3' arm
22625 + 39845 88 26 -30.6 5' arm      3' arm
22636 + 49882 87 25.5 -24.6 5' arm      3' arm
22664 - 7880 89 25.5 -24.1 5' arm      3' arm
22729 - 53058 89 25 -31.2 5' arm      3' arm
22660 - 6654 87 24.5 -22.4 5' arm      3' arm
22596 + 28077 80 24.5 -22 5' arm      3' arm
22615 + 34360 90 24 -26.5 5' arm      3' arm
22646 + 52118 89 24 -33.7 5' arm      3' arm
22590 + 26111 90 24 -25.3 5' arm      3' arm
22734 - 56145 89 24 -25.4 5' arm      3' arm
22726 - 48833 89 23.5 -23.1 5' arm      3' arm
22735 - 56334 90 23.5 -22.3 5' arm      3' arm
22600 + 29431 87 23.5 -19.8 5' arm      3' arm
22585 + 23105 90 23.5 -25.4 5' arm      3' arm
22725 - 48580 75 23 -20.1 5' arm      3' arm
22621 + 36992 90 23 -23.9 5' arm      3' arm
22572 + 17164 88 23 -19.4 5' arm      3' arm
22573 + 17486 90 23 -23.3 5' arm      3' arm
22589 + 26014 89 23 -22.4 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.