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GenBank Identifier | RefSeq Acc. | Name |
38707974 | NC_005285.1 | Pelargonium necrotic spot virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
24973 | + | 330 | 82 | 26 | -28.8 | NP_945115 | 5' arm 3' arm | ||
24974 | + | 1071 | 90 | 20 | -26.7 | NP_945114 | 5' arm 3' arm | ||
24975 | + | 1373 | 88 | 21 | -23.6 | NP_945114 | 5' arm 3' arm | ||
24976 | + | 1465 | 88 | 19 | -25.3 | NP_945114 | 5' arm 3' arm | ||
24977 | + | 2461 | 83 | 21.5 | -26.6 | NP_945114 | 5' arm 3' arm | ||
24978 | - | 1160 | 90 | 19.5 | -28.7 | NP_945114 | 5' arm 3' arm | ||
24979 | - | 1622 | 89 | 22 | -24.2 | NP_945114 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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