miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
28295	-	170886	89	34.5	-25.9	YP_073725		5' arm      3' arm
28270	+	170798	89	34.5	-27.9	YP_073725		5' arm      3' arm
28292	-	155145	90	24	-25.3	YP_073703		5' arm      3' arm
28267	+	155061	81	24.5	-27.26	YP_073703		5' arm      3' arm
28264	+	125087	90	25.5	-24.5	YP_073671		5' arm      3' arm
28263	+	113227	90	21	-27.4	YP_073659		5' arm      3' arm
28262	+	113066	89	20	-26.3	YP_073659		5' arm      3' arm
28287	-	113158	77	20.5	-26.9	YP_073659		5' arm      3' arm
28261	+	80803	90	28	-29.8	YP_073614		5' arm      3' arm
28284	-	80891	89	28.5	-28.2	YP_073614		5' arm      3' arm
28281	-	71829	89	24.5	-32	YP_073602		5' arm      3' arm
28259	+	71741	89	26	-28.9	YP_073602		5' arm      3' arm
28279	-	58736	89	27	-21.64	YP_073584		5' arm      3' arm
28268	+	161992	90	28.5	-27.7			5' arm      3' arm
28260	+	79495	90	38	-29.04			5' arm      3' arm
28273	-	1219	89	30	-34.3			5' arm      3' arm
28256	+	54382	86	29	-34.1			5' arm      3' arm
28255	+	28970	83	23	-27.3			5' arm      3' arm
28254	+	13184	90	26.5	-37.04			5' arm      3' arm
28252	+	6243	90	29.5	-22.5			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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