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| GenBank Identifier | RefSeq Acc. | Name |
| 47842848 | NC_005342.2 | Burkholderia cepacia phage Bcep43 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26164 | - | 13824 | 89 | 20.5 | -35.8 | NP_958122 | 5' arm 3' arm | ||
| 26131 | - | 3236 | 89 | 21 | -34.7 | NP_958108 | 5' arm 3' arm | ||
| 26083 | + | 29513 | 90 | 23 | -34.2 | NP_958149 | 5' arm 3' arm | ||
| 26066 | + | 20712 | 90 | 21.5 | -33.2 | NP_958132 | 5' arm 3' arm | ||
| 26218 | - | 41642 | 87 | 20.5 | -33 | NP_958163 | 5' arm 3' arm | ||
| 26212 | - | 39016 | 89 | 23 | -32.8 | NP_958158 | 5' arm 3' arm | ||
| 26156 | - | 11829 | 90 | 23 | -32.4 | NP_958121 | 5' arm 3' arm | ||
| 26050 | + | 11271 | 89 | 25.5 | -31.8 | NP_958121 | 5' arm 3' arm | ||
| 26090 | + | 31790 | 86 | 19.5 | -31.5 | NP_958150 | 5' arm 3' arm | ||
| 26126 | - | 825 | 87 | 21 | -31.4 | NP_958105 | 5' arm 3' arm | ||
| 26034 | + | 5668 | 89 | 21 | -30.9 | 5' arm 3' arm | |||
| 26079 | + | 27489 | 90 | 23 | -30.9 | NP_958144 | 5' arm 3' arm | ||
| 26187 | - | 25667 | 87 | 19.5 | -30.8 | NP_958139 | 5' arm 3' arm | ||
| 26228 | - | 44819 | 90 | 24 | -30.8 | NP_958166 | 5' arm 3' arm | ||
| 26104 | + | 38116 | 90 | 22.5 | -30.8 | NP_958158 | 5' arm 3' arm | ||
| 26071 | + | 22151 | 85 | 20.5 | -30.6 | NP_958136 | 5' arm 3' arm | ||
| 26059 | + | 15588 | 89 | 25.5 | -30.5 | NP_958124 | 5' arm 3' arm | ||
| 26142 | - | 7631 | 87 | 22 | -30.2 | NP_958117 | 5' arm 3' arm | ||
| 26207 | - | 37647 | 90 | 21.5 | -29.8 | NP_958158 | 5' arm 3' arm | ||
| 26025 | + | 2390 | 88 | 23 | -29.5 | NP_958108 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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