miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
30579	+	3966	89	21	-21.2	YP_164099		5' arm      3' arm
30650	-	75302	86	20.5	-21.3	YP_164173		5' arm      3' arm
30640	-	50556	89	19	-21.34	YP_164151		5' arm      3' arm
30645	-	67143	90	19.5	-21.4	YP_164167		5' arm      3' arm
30648	-	73672	88	21.5	-21.5	YP_164172		5' arm      3' arm
30619	+	116914	85	19.5	-21.6	YP_164227		5' arm      3' arm
30664	-	120080	88	23	-21.7	YP_164232		5' arm      3' arm
30603	+	73162	90	25.5	-21.9	YP_164172		5' arm      3' arm
30606	+	77119	90	20	-22.1	YP_164177		5' arm      3' arm
30615	+	106290	90	21	-22.4	YP_164215		5' arm      3' arm
30627	-	549	86	21	-22.5			3' arm
30595	+	51790	90	19	-22.6	YP_164152		5' arm      3' arm
30629	-	5484	84	21	-22.6	YP_164100		5' arm      3' arm
30662	-	119176	88	22.5	-22.6	YP_164231		5' arm      3' arm
30601	+	60348	82	20	-22.6	YP_164159		5' arm      3' arm
30607	+	78783	89	21	-22.6	YP_164178		5' arm      3' arm
30653	-	100690	90	22.5	-22.7	YP_164205		5' arm      3' arm
30584	+	19919	89	22.5	-22.7	YP_164120		5' arm      3' arm
30652	-	83593	89	22	-22.7	YP_164183		5' arm      3' arm
30602	+	71904	89	20.5	-22.7	YP_164171		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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