miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26775 - 32154 89 23 -27.4 5' arm      3' arm
26804 - 39226 88 20.5 -22.9 5' arm      3' arm
26694 + 20612 86 20 -26.5 5' arm      3' arm
26759 - 24151 87 22 -32.7 5' arm      3' arm
26774 - 31855 85 22 -24.3 5' arm      3' arm
26750 - 18015 90 20 -25.8 5' arm      3' arm
26793 - 36418 88 24.5 -22.7 5' arm      3' arm
26770 - 29944 90 19.5 -22.4 5' arm      3' arm
26631 + 637 83 19.5 -29.5 NP_996564 5' arm      3' arm
26728 - 419 88 21.5 -21.7 NP_996564 5' arm      3' arm
26634 + 1177 90 22.5 -22 NP_996565 5' arm      3' arm
26729 - 1050 90 20 -25.3 NP_996565 5' arm      3' arm
26632 + 823 88 19 -22.7 NP_996565 5' arm      3' arm
26633 + 1074 89 20.5 -24.8 NP_996565 5' arm      3' arm
26730 - 1495 90 20 -28.1 NP_996566 5' arm      3' arm
26635 + 1656 90 22 -22.9 NP_996567 5' arm      3' arm
26731 - 1596 85 22 -29.6 NP_996567 5' arm      3' arm
26732 - 2177 90 21 -24.3 NP_996568 5' arm      3' arm
26636 + 2165 90 19.5 -28.2 NP_996568 5' arm      3' arm
26638 + 2657 89 23 -24.3 NP_996568 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.