miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26783 - 34195 89 19 -25.9 NP_996599 5' arm      3' arm
26674 + 15559 90 19 -23.4 NP_996575 5' arm      3' arm
26734 - 4234 85 19 -20.3 NP_996570 5' arm      3' arm
26684 + 17778 90 19 -23.2 NP_996576 5' arm      3' arm
26632 + 823 88 19 -22.7 NP_996565 5' arm      3' arm
26677 + 16207 89 19 -27.9 NP_996575 5' arm      3' arm
26744 - 15320 86 19 -19.8 NP_996575 5' arm      3' arm
26762 - 26490 86 19 -19.9 NP_996589 5' arm      3' arm
26698 + 21962 86 19 -23.4 NP_996583 5' arm      3' arm
26723 + 38906 90 19.5 -25.7 NP_996605 5' arm      3' arm
26727 + 40886 90 19.5 -29.5 NP_996608 5' arm      3' arm
26812 - 42294 90 19.5 -27.7 NP_996610 5' arm      3' arm
26691 + 19919 85 19.5 -19.6 NP_996580 5' arm      3' arm
26636 + 2165 90 19.5 -28.2 NP_996568 5' arm      3' arm
26631 + 637 83 19.5 -29.5 NP_996564 5' arm      3' arm
26720 + 35149 89 19.5 -23.5 NP_996600 5' arm      3' arm
26696 + 21397 90 19.5 -20.1 NP_996583 5' arm      3' arm
26681 + 16815 86 19.5 -28 NP_996575 5' arm      3' arm
26653 + 8891 89 19.5 -23.7 NP_996572 5' arm      3' arm
26718 + 33777 90 19.5 -25.4 NP_996598 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.