miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26778 - 32509 89 26.5 -25 NP_996597 5' arm      3' arm
26693 + 20254 89 26 -23.1 NP_996580 5' arm      3' arm
26645 + 5229 90 25.5 -25.3 NP_996571 5' arm      3' arm
26788 - 35705 90 25.5 -22.4 NP_996601 5' arm      3' arm
26659 + 11123 86 25 -26.1 NP_996572 5' arm      3' arm
26673 + 15019 89 25 -29.3 NP_996574 5' arm      3' arm
26671 + 14633 87 25 -25.7 NP_996574 5' arm      3' arm
26793 - 36418 88 24.5 -22.7 5' arm      3' arm
26786 - 35130 88 24.5 -21.3 NP_996600 5' arm      3' arm
26807 - 40337 90 24.5 -33.4 NP_996608 5' arm      3' arm
26643 + 4829 90 24.5 -22.1 NP_996571 5' arm      3' arm
26777 - 32397 89 24 -24 NP_996597 5' arm      3' arm
26714 + 30645 89 24 -27.4 NP_996593 5' arm      3' arm
26637 + 2545 90 24 -22.6 NP_996568 5' arm      3' arm
26644 + 5075 89 24 -21.8 NP_996571 5' arm      3' arm
26689 + 19532 89 23.5 -27 NP_996579 5' arm      3' arm
26650 + 7132 88 23.5 -25.9 NP_996572 5' arm      3' arm
26797 - 37468 88 23.5 -20 NP_996604 5' arm      3' arm
26661 + 11890 90 23.5 -22.6 NP_996572 5' arm      3' arm
26639 + 4033 83 23.5 -20 NP_996570 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.