miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26739 - 7469 80 19.5 -20.6 NP_996572 5' arm      3' arm
26696 + 21397 90 19.5 -20.1 NP_996583 5' arm      3' arm
26653 + 8891 89 19.5 -23.7 NP_996572 5' arm      3' arm
26691 + 19919 85 19.5 -19.6 NP_996580 5' arm      3' arm
26753 - 19002 89 19.5 -20.3 NP_996579 5' arm      3' arm
26681 + 16815 86 19.5 -28 NP_996575 5' arm      3' arm
26779 - 32654 86 19.5 -26.1 NP_996597 5' arm      3' arm
26720 + 35149 89 19.5 -23.5 NP_996600 5' arm      3' arm
26741 - 9907 90 19.5 -20.8 NP_996572 5' arm      3' arm
26631 + 637 83 19.5 -29.5 NP_996564 5' arm      3' arm
26636 + 2165 90 19.5 -28.2 NP_996568 5' arm      3' arm
26727 + 40886 90 19.5 -29.5 NP_996608 5' arm      3' arm
26710 + 27694 88 19.5 -26 NP_996591 5' arm      3' arm
26770 - 29944 90 19.5 -22.4 5' arm      3' arm
26792 - 36199 90 19.5 -20 NP_996602 5' arm      3' arm
26729 - 1050 90 20 -25.3 NP_996565 5' arm      3' arm
26702 + 22874 89 20 -26.2 NP_996584 5' arm      3' arm
26791 - 36104 90 20 -20.5 NP_996602 5' arm      3' arm
26715 + 31277 84 20 -25.1 NP_996594 5' arm      3' arm
26646 + 5330 89 20 -25.5 NP_996571 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.