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| GenBank Identifier | RefSeq Acc. | Name |
| 45429963 | NC_005808.1 | Bordetella phage BMP-1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26681 | + | 16815 | 86 | 19.5 | -28 | NP_996575 | 5' arm 3' arm | ||
| 26677 | + | 16207 | 89 | 19 | -27.9 | NP_996575 | 5' arm 3' arm | ||
| 26738 | - | 7219 | 88 | 23 | -27.8 | NP_996572 | 5' arm 3' arm | ||
| 26812 | - | 42294 | 90 | 19.5 | -27.7 | NP_996610 | 5' arm 3' arm | ||
| 26692 | + | 20013 | 88 | 20.5 | -27.6 | NP_996580 | 5' arm 3' arm | ||
| 26813 | - | 42492 | 87 | 20.5 | -27.5 | NP_996610 | 5' arm 3' arm | ||
| 26775 | - | 32154 | 89 | 23 | -27.4 | 5' arm 3' arm | |||
| 26714 | + | 30645 | 89 | 24 | -27.4 | NP_996593 | 5' arm 3' arm | ||
| 26701 | + | 22667 | 89 | 21.5 | -27.2 | NP_996583 | 5' arm 3' arm | ||
| 26667 | + | 13275 | 88 | 22 | -27.1 | NP_996573 | 5' arm 3' arm | ||
| 26752 | - | 18497 | 90 | 21 | -27.1 | NP_996578 | 5' arm 3' arm | ||
| 26668 | + | 13523 | 83 | 20 | -27 | NP_996573 | 5' arm 3' arm | ||
| 26689 | + | 19532 | 89 | 23.5 | -27 | NP_996579 | 5' arm 3' arm | ||
| 26724 | + | 39512 | 87 | 20 | -26.8 | NP_996607 | 5' arm 3' arm | ||
| 26745 | - | 15516 | 89 | 20 | -26.63 | NP_996575 | 5' arm 3' arm | ||
| 26717 | + | 33064 | 87 | 21.5 | -26.6 | NP_996598 | 5' arm 3' arm | ||
| 26801 | - | 38297 | 83 | 20.5 | -26.6 | NP_996604 | 5' arm 3' arm | ||
| 26694 | + | 20612 | 86 | 20 | -26.5 | 5' arm 3' arm | |||
| 26702 | + | 22874 | 89 | 20 | -26.2 | NP_996584 | 5' arm 3' arm | ||
| 26766 | - | 28358 | 87 | 21.5 | -26.2 | NP_996591 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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