miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26811 - 42062 87 22 -26.1 NP_996610 5' arm      3' arm
26779 - 32654 86 19.5 -26.1 NP_996597 5' arm      3' arm
26659 + 11123 86 25 -26.1 NP_996572 5' arm      3' arm
26657 + 10690 90 20 -26 NP_996572 5' arm      3' arm
26710 + 27694 88 19.5 -26 NP_996591 5' arm      3' arm
26783 - 34195 89 19 -25.9 NP_996599 5' arm      3' arm
26650 + 7132 88 23.5 -25.9 NP_996572 5' arm      3' arm
26750 - 18015 90 20 -25.8 5' arm      3' arm
26671 + 14633 87 25 -25.7 NP_996574 5' arm      3' arm
26723 + 38906 90 19.5 -25.7 NP_996605 5' arm      3' arm
26758 - 23953 90 22.5 -25.6 NP_996586 5' arm      3' arm
26646 + 5330 89 20 -25.5 NP_996571 5' arm      3' arm
26785 - 34425 87 22.5 -25.5 NP_996600 5' arm      3' arm
26722 + 37768 89 20.5 -25.4 NP_996604 5' arm      3' arm
26802 - 38455 89 23 -25.4 NP_996604 5' arm      3' arm
26718 + 33777 90 19.5 -25.4 NP_996598 5' arm      3' arm
26765 - 28025 86 20 -25.4 NP_996591 5' arm      3' arm
26663 + 12490 89 21 -25.4 NP_996573 5' arm      3' arm
26749 - 17321 80 20 -25.3 NP_996576 5' arm      3' arm
26729 - 1050 90 20 -25.3 NP_996565 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.