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GenBank Identifier | RefSeq Acc. | Name |
45429963 | NC_005808.1 | Bordetella phage BMP-1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
26811 | - | 42062 | 87 | 22 | -26.1 | NP_996610 | 5' arm 3' arm | ||
26779 | - | 32654 | 86 | 19.5 | -26.1 | NP_996597 | 5' arm 3' arm | ||
26659 | + | 11123 | 86 | 25 | -26.1 | NP_996572 | 5' arm 3' arm | ||
26657 | + | 10690 | 90 | 20 | -26 | NP_996572 | 5' arm 3' arm | ||
26710 | + | 27694 | 88 | 19.5 | -26 | NP_996591 | 5' arm 3' arm | ||
26783 | - | 34195 | 89 | 19 | -25.9 | NP_996599 | 5' arm 3' arm | ||
26650 | + | 7132 | 88 | 23.5 | -25.9 | NP_996572 | 5' arm 3' arm | ||
26750 | - | 18015 | 90 | 20 | -25.8 | 5' arm 3' arm | |||
26671 | + | 14633 | 87 | 25 | -25.7 | NP_996574 | 5' arm 3' arm | ||
26723 | + | 38906 | 90 | 19.5 | -25.7 | NP_996605 | 5' arm 3' arm | ||
26758 | - | 23953 | 90 | 22.5 | -25.6 | NP_996586 | 5' arm 3' arm | ||
26646 | + | 5330 | 89 | 20 | -25.5 | NP_996571 | 5' arm 3' arm | ||
26785 | - | 34425 | 87 | 22.5 | -25.5 | NP_996600 | 5' arm 3' arm | ||
26722 | + | 37768 | 89 | 20.5 | -25.4 | NP_996604 | 5' arm 3' arm | ||
26802 | - | 38455 | 89 | 23 | -25.4 | NP_996604 | 5' arm 3' arm | ||
26718 | + | 33777 | 90 | 19.5 | -25.4 | NP_996598 | 5' arm 3' arm | ||
26765 | - | 28025 | 86 | 20 | -25.4 | NP_996591 | 5' arm 3' arm | ||
26663 | + | 12490 | 89 | 21 | -25.4 | NP_996573 | 5' arm 3' arm | ||
26749 | - | 17321 | 80 | 20 | -25.3 | NP_996576 | 5' arm 3' arm | ||
26729 | - | 1050 | 90 | 20 | -25.3 | NP_996565 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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