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GenBank Identifier | RefSeq Acc. | Name |
45429963 | NC_005808.1 | Bordetella phage BMP-1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
26651 | + | 7273 | 87 | 20.5 | -24.5 | NP_996572 | 5' arm 3' arm | ||
26654 | + | 9378 | 90 | 21 | -19.4 | NP_996572 | 5' arm 3' arm | ||
26657 | + | 10690 | 90 | 20 | -26 | NP_996572 | 5' arm 3' arm | ||
26650 | + | 7132 | 88 | 23.5 | -25.9 | NP_996572 | 5' arm 3' arm | ||
26662 | + | 12160 | 90 | 21 | -19.8 | NP_996572 | 5' arm 3' arm | ||
26649 | + | 6247 | 85 | 20 | -23.1 | NP_996572 | 5' arm 3' arm | ||
26655 | + | 9502 | 85 | 21 | -23.5 | NP_996572 | 5' arm 3' arm | ||
26656 | + | 9690 | 89 | 20.5 | -24.3 | NP_996572 | 5' arm 3' arm | ||
26660 | + | 11480 | 90 | 20.5 | -28.5 | NP_996572 | 5' arm 3' arm | ||
26658 | + | 10817 | 90 | 22 | -23.3 | NP_996572 | 5' arm 3' arm | ||
26661 | + | 11890 | 90 | 23.5 | -22.6 | NP_996572 | 5' arm 3' arm | ||
26742 | - | 10491 | 90 | 21 | -23.5 | NP_996572 | 5' arm 3' arm | ||
26740 | - | 7831 | 86 | 19.5 | -34.1 | NP_996572 | 5' arm 3' arm | ||
26659 | + | 11123 | 86 | 25 | -26.1 | NP_996572 | 5' arm 3' arm | ||
26653 | + | 8891 | 89 | 19.5 | -23.7 | NP_996572 | 5' arm 3' arm | ||
26743 | - | 11144 | 90 | 22 | -20.2 | NP_996572 | 5' arm 3' arm | ||
26666 | + | 13143 | 90 | 21 | -24.5 | NP_996573 | 5' arm 3' arm | ||
26667 | + | 13275 | 88 | 22 | -27.1 | NP_996573 | 5' arm 3' arm | ||
26670 | + | 13988 | 82 | 21 | -20.02 | NP_996573 | 5' arm 3' arm | ||
26663 | + | 12490 | 89 | 21 | -25.4 | NP_996573 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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