miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26664 + 12797 89 20.5 -20.9 NP_996573 5' arm      3' arm
26666 + 13143 90 21 -24.5 NP_996573 5' arm      3' arm
26663 + 12490 89 21 -25.4 NP_996573 5' arm      3' arm
26670 + 13988 82 21 -20.02 NP_996573 5' arm      3' arm
26673 + 15019 89 25 -29.3 NP_996574 5' arm      3' arm
26671 + 14633 87 25 -25.7 NP_996574 5' arm      3' arm
26672 + 14923 89 22 -20.2 NP_996574 5' arm      3' arm
26745 - 15516 89 20 -26.63 NP_996575 5' arm      3' arm
26746 - 15828 90 21 -23.4 NP_996575 5' arm      3' arm
26747 - 16221 90 20 -22.1 NP_996575 5' arm      3' arm
26679 + 16486 90 21 -21.7 NP_996575 5' arm      3' arm
26675 + 16014 90 20.5 -23.6 NP_996575 5' arm      3' arm
26681 + 16815 86 19.5 -28 NP_996575 5' arm      3' arm
26674 + 15559 90 19 -23.4 NP_996575 5' arm      3' arm
26677 + 16207 89 19 -27.9 NP_996575 5' arm      3' arm
26682 + 17064 90 21.5 -22 NP_996575 5' arm      3' arm
26676 + 16105 90 21.5 -23.9 NP_996575 5' arm      3' arm
26678 + 16374 90 22.5 -22.4 NP_996575 5' arm      3' arm
26680 + 16704 84 21 -22.8 NP_996575 5' arm      3' arm
26744 - 15320 86 19 -19.8 NP_996575 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.