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| GenBank Identifier | RefSeq Acc. | Name |
| 45429963 | NC_005808.1 | Bordetella phage BMP-1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26645 | + | 5229 | 90 | 25.5 | -25.3 | NP_996571 | 5' arm 3' arm | ||
| 26703 | + | 23940 | 90 | 21.5 | -25.3 | NP_996586 | 5' arm 3' arm | ||
| 26781 | - | 33863 | 85 | 19.5 | -25.1 | NP_996598 | 5' arm 3' arm | ||
| 26755 | - | 21439 | 89 | 21.5 | -25.1 | NP_996583 | 5' arm 3' arm | ||
| 26715 | + | 31277 | 84 | 20 | -25.1 | NP_996594 | 5' arm 3' arm | ||
| 26778 | - | 32509 | 89 | 26.5 | -25 | NP_996597 | 5' arm 3' arm | ||
| 26784 | - | 34287 | 87 | 20 | -24.9 | NP_996599 | 5' arm 3' arm | ||
| 26809 | - | 40932 | 89 | 21 | -24.9 | NP_996608 | 5' arm 3' arm | ||
| 26633 | + | 1074 | 89 | 20.5 | -24.8 | NP_996565 | 5' arm 3' arm | ||
| 26709 | + | 27419 | 79 | 21 | -24.7 | NP_996591 | 5' arm 3' arm | ||
| 26736 | - | 6057 | 85 | 22 | -24.6 | NP_996571 | 5' arm 3' arm | ||
| 26666 | + | 13143 | 90 | 21 | -24.5 | NP_996573 | 5' arm 3' arm | ||
| 26761 | - | 25101 | 89 | 23.5 | -24.5 | NP_996587 | 5' arm 3' arm | ||
| 26641 | + | 4336 | 89 | 20 | -24.5 | NP_996570 | 5' arm 3' arm | ||
| 26651 | + | 7273 | 87 | 20.5 | -24.5 | NP_996572 | 5' arm 3' arm | ||
| 26774 | - | 31855 | 85 | 22 | -24.3 | 5' arm 3' arm | |||
| 26732 | - | 2177 | 90 | 21 | -24.3 | NP_996568 | 5' arm 3' arm | ||
| 26656 | + | 9690 | 89 | 20.5 | -24.3 | NP_996572 | 5' arm 3' arm | ||
| 26768 | - | 29467 | 90 | 21 | -24.3 | NP_996591 | 5' arm 3' arm | ||
| 26638 | + | 2657 | 89 | 23 | -24.3 | NP_996568 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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