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GenBank Identifier | RefSeq Acc. | Name |
45429963 | NC_005808.1 | Bordetella phage BMP-1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
26691 | + | 19919 | 85 | 19.5 | -19.6 | NP_996580 | 5' arm 3' arm | ||
26692 | + | 20013 | 88 | 20.5 | -27.6 | NP_996580 | 5' arm 3' arm | ||
26693 | + | 20254 | 89 | 26 | -23.1 | NP_996580 | 5' arm 3' arm | ||
26694 | + | 20612 | 86 | 20 | -26.5 | 5' arm 3' arm | |||
26695 | + | 21064 | 88 | 22 | -20.4 | NP_996583 | 5' arm 3' arm | ||
26696 | + | 21397 | 90 | 19.5 | -20.1 | NP_996583 | 5' arm 3' arm | ||
26697 | + | 21763 | 89 | 20.5 | -21.1 | NP_996583 | 5' arm 3' arm | ||
26698 | + | 21962 | 86 | 19 | -23.4 | NP_996583 | 5' arm 3' arm | ||
26699 | + | 22059 | 90 | 23 | -37.4 | NP_996583 | 5' arm 3' arm | ||
26700 | + | 22325 | 90 | 20.5 | -21.3 | NP_996583 | 5' arm 3' arm | ||
26701 | + | 22667 | 89 | 21.5 | -27.2 | NP_996583 | 5' arm 3' arm | ||
26702 | + | 22874 | 89 | 20 | -26.2 | NP_996584 | 5' arm 3' arm | ||
26703 | + | 23940 | 90 | 21.5 | -25.3 | NP_996586 | 5' arm 3' arm | ||
26704 | + | 24501 | 89 | 20 | -22.3 | NP_996587 | 5' arm 3' arm | ||
26705 | + | 24594 | 90 | 23 | -24.2 | NP_996587 | 5' arm 3' arm | ||
26706 | + | 25780 | 90 | 22.5 | -30.3 | NP_996588 | 5' arm 3' arm | ||
26707 | + | 26174 | 83 | 20 | -23.8 | NP_996588 | 5' arm 3' arm | ||
26708 | + | 26842 | 90 | 20 | -23.2 | NP_996590 | 5' arm 3' arm | ||
26709 | + | 27419 | 79 | 21 | -24.7 | NP_996591 | 5' arm 3' arm | ||
26710 | + | 27694 | 88 | 19.5 | -26 | NP_996591 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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