miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26788 - 35705 90 25.5 -22.4 NP_996601 5' arm      3' arm
26756 - 22048 88 20.5 -22.4 NP_996583 5' arm      3' arm
26737 - 6692 87 21 -22.4 NP_996572 5' arm      3' arm
26678 + 16374 90 22.5 -22.4 NP_996575 5' arm      3' arm
26771 - 30337 88 22 -22.5 NP_996592 5' arm      3' arm
26733 - 3090 90 20.5 -22.5 NP_996569 5' arm      3' arm
26661 + 11890 90 23.5 -22.6 NP_996572 5' arm      3' arm
26637 + 2545 90 24 -22.6 NP_996568 5' arm      3' arm
26795 - 37030 87 22 -22.6 NP_996604 5' arm      3' arm
26632 + 823 88 19 -22.7 NP_996565 5' arm      3' arm
26757 - 23571 87 20.5 -22.7 NP_996585 5' arm      3' arm
26793 - 36418 88 24.5 -22.7 5' arm      3' arm
26680 + 16704 84 21 -22.8 NP_996575 5' arm      3' arm
26804 - 39226 88 20.5 -22.9 5' arm      3' arm
26635 + 1656 90 22 -22.9 NP_996567 5' arm      3' arm
26649 + 6247 85 20 -23.1 NP_996572 5' arm      3' arm
26693 + 20254 89 26 -23.1 NP_996580 5' arm      3' arm
26685 + 18408 90 22.5 -23.1 NP_996578 5' arm      3' arm
26684 + 17778 90 19 -23.2 NP_996576 5' arm      3' arm
26780 - 33778 90 22 -23.2 NP_996598 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.