miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26679 + 16486 90 21 -21.7 NP_996575 5' arm      3' arm
26725 + 40248 90 23 -21.7 NP_996608 5' arm      3' arm
26760 - 24556 89 22.5 -21.7 NP_996587 5' arm      3' arm
26728 - 419 88 21.5 -21.7 NP_996564 5' arm      3' arm
26644 + 5075 89 24 -21.8 NP_996571 5' arm      3' arm
26686 + 18535 88 22 -21.8 NP_996578 5' arm      3' arm
26773 - 31750 90 22 -21.9 NP_996595 5' arm      3' arm
26640 + 4118 90 21.5 -22 NP_996570 5' arm      3' arm
26790 - 35981 87 22 -22 NP_996602 5' arm      3' arm
26634 + 1177 90 22.5 -22 NP_996565 5' arm      3' arm
26682 + 17064 90 21.5 -22 NP_996575 5' arm      3' arm
26712 + 30382 89 20.5 -22 NP_996592 5' arm      3' arm
26747 - 16221 90 20 -22.1 NP_996575 5' arm      3' arm
26643 + 4829 90 24.5 -22.1 NP_996571 5' arm      3' arm
26647 + 5566 88 21.5 -22.1 NP_996571 5' arm      3' arm
26754 - 20061 90 20.5 -22.2 NP_996580 5' arm      3' arm
26808 - 40785 89 21 -22.2 NP_996608 5' arm      3' arm
26704 + 24501 89 20 -22.3 NP_996587 5' arm      3' arm
26716 + 31564 89 19.5 -22.3 NP_996595 5' arm      3' arm
26770 - 29944 90 19.5 -22.4 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.