miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26774 - 31855 85 22 -24.3 5' arm      3' arm
26705 + 24594 90 23 -24.2 NP_996587 5' arm      3' arm
26777 - 32397 89 24 -24 NP_996597 5' arm      3' arm
26676 + 16105 90 21.5 -23.9 NP_996575 5' arm      3' arm
26707 + 26174 83 20 -23.8 NP_996588 5' arm      3' arm
26735 - 5398 75 20 -23.8 NP_996571 5' arm      3' arm
26642 + 4583 89 20 -23.8 NP_996571 5' arm      3' arm
26800 - 38161 90 20 -23.7 NP_996604 5' arm      3' arm
26653 + 8891 89 19.5 -23.7 NP_996572 5' arm      3' arm
26711 + 27940 86 21.5 -23.6 NP_996591 5' arm      3' arm
26675 + 16014 90 20.5 -23.6 NP_996575 5' arm      3' arm
26720 + 35149 89 19.5 -23.5 NP_996600 5' arm      3' arm
26742 - 10491 90 21 -23.5 NP_996572 5' arm      3' arm
26655 + 9502 85 21 -23.5 NP_996572 5' arm      3' arm
26698 + 21962 86 19 -23.4 NP_996583 5' arm      3' arm
26746 - 15828 90 21 -23.4 NP_996575 5' arm      3' arm
26674 + 15559 90 19 -23.4 NP_996575 5' arm      3' arm
26688 + 19264 85 22.5 -23.4 NP_996579 5' arm      3' arm
26806 - 40129 87 21 -23.4 NP_996608 5' arm      3' arm
26713 + 30550 89 20.5 -23.3 NP_996593 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.