miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26717 + 33064 87 21.5 -26.6 NP_996598 5' arm      3' arm
26718 + 33777 90 19.5 -25.4 NP_996598 5' arm      3' arm
26780 - 33778 90 22 -23.2 NP_996598 5' arm      3' arm
26779 - 32654 86 19.5 -26.1 NP_996597 5' arm      3' arm
26778 - 32509 89 26.5 -25 NP_996597 5' arm      3' arm
26777 - 32397 89 24 -24 NP_996597 5' arm      3' arm
26776 - 32296 88 19.5 -19.6 NP_996596 5' arm      3' arm
26716 + 31564 89 19.5 -22.3 NP_996595 5' arm      3' arm
26773 - 31750 90 22 -21.9 NP_996595 5' arm      3' arm
26772 - 31158 85 20 -20.4 NP_996594 5' arm      3' arm
26715 + 31277 84 20 -25.1 NP_996594 5' arm      3' arm
26713 + 30550 89 20.5 -23.3 NP_996593 5' arm      3' arm
26714 + 30645 89 24 -27.4 NP_996593 5' arm      3' arm
26771 - 30337 88 22 -22.5 NP_996592 5' arm      3' arm
26712 + 30382 89 20.5 -22 NP_996592 5' arm      3' arm
26767 - 29010 86 21 -19.4 NP_996591 5' arm      3' arm
26768 - 29467 90 21 -24.3 NP_996591 5' arm      3' arm
26709 + 27419 79 21 -24.7 NP_996591 5' arm      3' arm
26710 + 27694 88 19.5 -26 NP_996591 5' arm      3' arm
26769 - 29578 90 22.5 -19.5 NP_996591 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.