miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26652 + 8231 84 20.5 -21.6 NP_996572 5' arm      3' arm
26651 + 7273 87 20.5 -24.5 NP_996572 5' arm      3' arm
26641 + 4336 89 20 -24.5 NP_996570 5' arm      3' arm
26633 + 1074 89 20.5 -24.8 NP_996565 5' arm      3' arm
26640 + 4118 90 21.5 -22 NP_996570 5' arm      3' arm
26635 + 1656 90 22 -22.9 NP_996567 5' arm      3' arm
26634 + 1177 90 22.5 -22 NP_996565 5' arm      3' arm
26638 + 2657 89 23 -24.3 NP_996568 5' arm      3' arm
26639 + 4033 83 23.5 -20 NP_996570 5' arm      3' arm
26637 + 2545 90 24 -22.6 NP_996568 5' arm      3' arm
26642 + 4583 89 20 -23.8 NP_996571 5' arm      3' arm
26631 + 637 83 19.5 -29.5 NP_996564 5' arm      3' arm
26654 + 9378 90 21 -19.4 NP_996572 5' arm      3' arm
26648 + 5692 90 21.5 -20.3 NP_996571 5' arm      3' arm
26647 + 5566 88 21.5 -22.1 NP_996571 5' arm      3' arm
26650 + 7132 88 23.5 -25.9 NP_996572 5' arm      3' arm
26644 + 5075 89 24 -21.8 NP_996571 5' arm      3' arm
26645 + 5229 90 25.5 -25.3 NP_996571 5' arm      3' arm
26632 + 823 88 19 -22.7 NP_996565 5' arm      3' arm
26636 + 2165 90 19.5 -28.2 NP_996568 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.