miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429984 NC_005809.1 Bordetella phage BIP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26965 - 32508 89 26.5 -25 NP_996645 5' arm      3' arm
26877 + 20254 89 26 -23.1 NP_996628 5' arm      3' arm
26829 + 5229 90 25.5 -25.3 NP_996619 5' arm      3' arm
26974 - 35680 90 25.5 -22.4 NP_996649 5' arm      3' arm
26843 + 11123 86 25 -26.1 NP_996620 5' arm      3' arm
26857 + 15019 89 25 -29.3 NP_996622 5' arm      3' arm
26855 + 14633 87 25 -25.7 NP_996622 5' arm      3' arm
26972 - 35105 88 24.5 -21.3 NP_996648 5' arm      3' arm
26827 + 4829 90 24.5 -22.1 NP_996619 5' arm      3' arm
26993 - 40312 90 24.5 -33.4 NP_996656 5' arm      3' arm
26979 - 36393 88 24.5 -22.7 5' arm      3' arm
26820 + 2545 90 24 -22.6 NP_996616 5' arm      3' arm
26828 + 5075 89 24 -21.8 NP_996619 5' arm      3' arm
26964 - 32396 89 24 -24 NP_996645 5' arm      3' arm
26898 + 30644 89 24 -27.4 NP_996641 5' arm      3' arm
26983 - 37443 88 23.5 -20 NP_996652 5' arm      3' arm
26834 + 7132 88 23.5 -25.9 NP_996620 5' arm      3' arm
26823 + 4033 83 23.5 -20 NP_996618 5' arm      3' arm
26873 + 19532 89 23.5 -27 NP_996627 5' arm      3' arm
26845 + 11890 90 23.5 -22.6 NP_996620 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.