miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429984 NC_005809.1 Bordetella phage BIP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26927 - 7469 80 19.5 -20.6 NP_996620 5' arm      3' arm
26875 + 19919 85 19.5 -19.6 NP_996628 5' arm      3' arm
26814 + 637 83 19.5 -29.5 NP_996612 5' arm      3' arm
26929 - 9907 90 19.5 -20.8 NP_996620 5' arm      3' arm
26963 - 32295 88 19.5 -19.6 NP_996644 5' arm      3' arm
26904 + 33545 90 19.5 -20.2 NP_996646 5' arm      3' arm
26880 + 21397 90 19.5 -20.1 NP_996631 5' arm      3' arm
26998 - 42269 90 19.5 -27.7 NP_996659 5' arm      3' arm
26907 + 35124 89 19.5 -23.5 NP_996648 5' arm      3' arm
26905 + 33752 90 19.5 -25.4 NP_996646 5' arm      3' arm
26819 + 2165 90 19.5 -28.2 NP_996616 5' arm      3' arm
26865 + 16815 86 19.5 -28 NP_996623 5' arm      3' arm
26894 + 27694 88 19.5 -26 NP_996639 5' arm      3' arm
26966 - 32653 86 19.5 -26.1 NP_996645 5' arm      3' arm
26991 - 39655 90 19.5 -20.7 NP_996655 5' arm      3' arm
26978 - 36174 90 19.5 -20 NP_996650 5' arm      3' arm
26916 - 1050 90 20 -25.3 NP_996613 5' arm      3' arm
26886 + 22874 89 20 -26.2 NP_996632 5' arm      3' arm
26899 + 31276 84 20 -25.1 NP_996642 5' arm      3' arm
26970 - 34262 87 20 -24.9 NP_996647 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.