miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27031 + 11173 89 19.5 -23.5 YP_003778 5' arm      3' arm
27029 + 10427 90 22 -33.6 YP_003778 5' arm      3' arm
27151 - 10887 90 19.5 -25.1 YP_003778 5' arm      3' arm
27150 - 10655 87 19.5 -24.3 YP_003778 5' arm      3' arm
27032 + 11519 89 20.5 -24.7 YP_003778 5' arm      3' arm
27033 + 12550 87 20.5 -19.6 YP_003781 5' arm      3' arm
27036 + 12987 89 22.5 -30.8 YP_003781 5' arm      3' arm
27034 + 12681 85 19.5 -20 YP_003781 5' arm      3' arm
27035 + 12858 89 19 -23.4 YP_003781 5' arm      3' arm
27037 + 13230 87 22.5 -21.6 YP_003781 5' arm      3' arm
27038 + 14116 90 20 -21.2 YP_003783 5' arm      3' arm
27041 + 15793 89 19 -26.4 YP_003784 5' arm      3' arm
27039 + 15051 90 21 -22.6 YP_003784 5' arm      3' arm
27040 + 15599 87 19 -24.5 YP_003784 5' arm      3' arm
27042 + 16843 88 19 -23.4 YP_003785 5' arm      3' arm
27153 - 17456 89 21 -21.84 YP_003785 5' arm      3' arm
27043 + 17200 90 27 -22.4 YP_003785 5' arm      3' arm
27154 - 18901 90 21.5 -21.4 YP_003786 5' arm      3' arm
27044 + 17814 90 23 -20.2 YP_003786 5' arm      3' arm
27045 + 17962 90 23 -26.3 YP_003786 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.