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GenBank Identifier | RefSeq Acc. | Name |
47131155 | NC_005872.1 | Pyrobaculum spherical virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
27484 | + | 1310 | 87 | 23.5 | -30 | 5' arm 3' arm | |||
27485 | + | 6736 | 86 | 29.5 | -31.3 | YP_015530 | 5' arm 3' arm | ||
27486 | + | 8049 | 90 | 20.5 | -23.7 | YP_015532 | 5' arm 3' arm | ||
27487 | + | 11167 | 88 | 22.5 | -24.5 | YP_015538 | 5' arm 3' arm | ||
27488 | + | 13596 | 90 | 22.5 | -20.3 | YP_015541 | 5' arm 3' arm | ||
27489 | + | 13794 | 90 | 23 | -22.9 | YP_015541 | 5' arm 3' arm | ||
27490 | + | 14042 | 86 | 21.5 | -20 | YP_015542 | 5' arm 3' arm | ||
27491 | + | 15139 | 90 | 21.5 | -19.6 | YP_015543 | 5' arm 3' arm | ||
27492 | + | 19805 | 90 | 24.5 | -22.4 | YP_015554 | 5' arm 3' arm | ||
27493 | + | 20321 | 90 | 23.5 | -20.1 | 5' arm 3' arm | |||
27494 | + | 20625 | 90 | 24 | -20 | YP_015555 | 5' arm 3' arm | ||
27495 | + | 22666 | 86 | 23 | -20.2 | YP_015560 | 5' arm 3' arm | ||
27496 | + | 26283 | 85 | 23 | -24 | YP_015567 | 5' arm 3' arm | ||
27497 | - | 309 | 89 | 20.5 | -20.9 | YP_015522 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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