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GenBank Identifier | RefSeq Acc. | Name |
66476549 | NC_007016.1 | Macaca fuscata rhadinovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
32068 | + | 255 | 88 | 21 | -30.8 | 5' arm 3' arm | |||
32069 | + | 351 | 88 | 21 | -30.8 | 5' arm 3' arm | |||
32070 | + | 813 | 90 | 21 | -29.9 | YP_238304 | 5' arm 3' arm | ||
32071 | + | 9933 | 90 | 22 | -26 | YP_238313 | 5' arm 3' arm | ||
32072 | + | 10192 | 82 | 19.5 | -19.9 | YP_238313 | 5' arm 3' arm | ||
32073 | + | 14108 | 90 | 23.5 | -31.7 | YP_238317 | 5' arm 3' arm | ||
32074 | + | 14847 | 88 | 20 | -28.5 | YP_238319 | 5' arm 3' arm | ||
32075 | + | 15711 | 86 | 21.5 | -23 | YP_238317 | 5' arm 3' arm | ||
32076 | + | 16235 | 90 | 19 | -22.8 | 5' arm 3' arm | |||
32077 | + | 16877 | 90 | 19.5 | -28.8 | YP_238321 | 5' arm 3' arm | ||
32078 | + | 17214 | 90 | 21 | -19.7 | YP_238322 | 5' arm 3' arm | ||
32079 | + | 17717 | 88 | 20.5 | -23.7 | YP_238323 | 5' arm 3' arm | ||
32080 | + | 17863 | 89 | 23.5 | -24.95 | YP_238323 | 5' arm 3' arm | ||
32081 | + | 21811 | 84 | 19.5 | -19.5 | YP_238328 | 5' arm 3' arm | ||
32082 | + | 22879 | 88 | 19 | -26.4 | YP_238330 | 5' arm 3' arm | ||
32083 | + | 22990 | 87 | 25.5 | -34.3 | 5' arm 3' arm | |||
32084 | + | 25791 | 90 | 21.5 | -20.2 | YP_238331 | 5' arm 3' arm | ||
32085 | + | 26566 | 90 | 20.5 | -19.7 | YP_238332 | 5' arm 3' arm | ||
32086 | + | 26731 | 86 | 19.5 | -27.8 | YP_238332 | 5' arm 3' arm | ||
32087 | + | 27660 | 89 | 22.5 | -23.2 | YP_238333 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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