miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
66476549 NC_007016.1 Macaca fuscata rhadinovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
32230 - 130979 88 21 -25.5 5' arm      3' arm
32229 - 130883 88 21 -25.5 5' arm      3' arm
32228 - 130764 90 22 -25.5 5' arm      3' arm
32227 - 125261 87 19 -19.4 YP_238464 5' arm      3' arm
32226 - 124081 90 21.5 -24.8 YP_238464 5' arm      3' arm
32225 - 123423 88 20.5 -28.1 YP_238465 5' arm      3' arm
32224 - 120309 85 19.5 -20.5 5' arm      3' arm
32223 - 119194 88 23 -26 YP_238456 5' arm      3' arm
32222 - 116573 88 20.5 -24.1 YP_238453 5' arm      3' arm
32221 - 116438 88 23.5 -29.9 YP_238453 5' arm      3' arm
32220 - 116306 88 26 -31.7 5' arm      3' arm
32219 - 116114 90 22.5 -21.8 5' arm      3' arm
32218 - 115990 88 22.5 -31.3 YP_238452 5' arm      3' arm
32217 - 115832 90 19.5 -33.3 YP_238450 5' arm      3' arm
32216 - 115497 88 20 -22.4 YP_238450 5' arm      3' arm
32215 - 115128 90 30 -30.8 5' arm      3' arm
32214 - 114816 87 22 -31.9 5' arm      3' arm
32213 - 113528 84 27 -21.9 5' arm      3' arm
32212 - 113425 89 24 -25.3 5' arm      3' arm
32211 - 112558 86 28.5 -20.8 YP_238447 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.