miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
66476549 NC_007016.1 Macaca fuscata rhadinovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
32210 - 112372 87 29 -26.4 5' arm      3' arm
32209 - 112191 88 26.5 -28.5 5' arm      3' arm
32208 - 112019 89 27.5 -28.3 5' arm      3' arm
32207 - 111878 90 20 -21 5' arm      3' arm
32206 - 111759 90 30 -33.3 5' arm      3' arm
32205 - 110684 89 22 -23.7 YP_238446 5' arm      3' arm
32204 - 107680 90 22.5 -24.3 YP_238439 5' arm      3' arm
32203 - 107558 84 21.5 -24.1 YP_238438 5' arm      3' arm
32202 - 106995 84 22 -23 YP_238438 5' arm      3' arm
32201 - 106362 83 20 -25.3 YP_238437 5' arm      3' arm
32200 - 105807 90 21.5 -19.6 YP_238435 5' arm      3' arm
32199 - 105416 90 22 -21 YP_238434 5' arm      3' arm
32198 - 104581 90 19 -23.6 YP_238433 5' arm      3' arm
32197 - 104366 87 22 -22.9 YP_238427 5' arm      3' arm
32196 - 104077 90 21.5 -26 YP_238427 5' arm      3' arm
32195 - 103791 86 20.5 -23 YP_238427 5' arm      3' arm
32194 - 103655 89 21.5 -27.3 YP_238427 5' arm      3' arm
32193 - 103182 89 24.5 -22.5 YP_238432 5' arm      3' arm
32192 - 101887 89 21.5 -24.1 YP_238427 5' arm      3' arm
32191 - 101482 90 23.5 -21.2 YP_238427 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.