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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31900 | - | 56032 | 89 | 19.5 | -25.2 | YP_224010 | 5' arm 3' arm | ||
| 31784 | - | 1698 | 88 | 20.5 | -25.2 | YP_223929 | 5' arm 3' arm | ||
| 31764 | + | 43429 | 87 | 19 | -25 | YP_223996 | 5' arm 3' arm | ||
| 31844 | - | 29588 | 88 | 22 | -25 | YP_223976 | 5' arm 3' arm | ||
| 31911 | - | 63460 | 89 | 19 | -24.9 | YP_224014 | 5' arm 3' arm | ||
| 31836 | - | 26409 | 90 | 20 | -24.9 | YP_223967 | 5' arm 3' arm | ||
| 31789 | - | 4743 | 87 | 19.5 | -24.9 | YP_223931 | 5' arm 3' arm | ||
| 31773 | + | 54333 | 89 | 22.5 | -24.9 | YP_224008 | 5' arm 3' arm | ||
| 31720 | + | 8447 | 90 | 20.5 | -24.9 | YP_223937 | 5' arm 3' arm | ||
| 31756 | + | 36455 | 89 | 20.5 | -24.8 | YP_223986 | 5' arm 3' arm | ||
| 31768 | + | 49378 | 84 | 21 | -24.7 | YP_224004 | 5' arm 3' arm | ||
| 31741 | + | 24724 | 87 | 19.5 | -24.7 | YP_223961 | 5' arm 3' arm | ||
| 31786 | - | 2222 | 89 | 21 | -24.6 | YP_223929 | 5' arm 3' arm | ||
| 31803 | - | 9768 | 89 | 20.5 | -24.6 | YP_223938 | 5' arm 3' arm | ||
| 31766 | + | 48380 | 89 | 19 | -24.6 | YP_224002 | 5' arm 3' arm | ||
| 31864 | - | 38316 | 90 | 21 | -24.6 | 5' arm 3' arm | |||
| 31834 | - | 25540 | 88 | 21.5 | -24.6 | YP_223964 | 5' arm 3' arm | ||
| 31740 | + | 24416 | 90 | 19.5 | -24.5 | YP_223961 | 5' arm 3' arm | ||
| 31872 | - | 40317 | 90 | 21.5 | -24.4 | YP_223992 | 5' arm 3' arm | ||
| 31899 | - | 55641 | 89 | 19.5 | -24.3 | YP_224010 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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