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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31814 | - | 17207 | 89 | 24.5 | -29.8 | YP_223951 | 5' arm 3' arm | ||
| 31815 | - | 17323 | 89 | 24 | -20.7 | YP_223951 | 5' arm 3' arm | ||
| 31732 | + | 17131 | 90 | 19 | -23.8 | YP_223951 | 5' arm 3' arm | ||
| 31818 | - | 18542 | 88 | 19.5 | -21 | YP_223952 | 5' arm 3' arm | ||
| 31733 | + | 17638 | 89 | 20.5 | -29 | YP_223952 | 5' arm 3' arm | ||
| 31816 | - | 17424 | 86 | 24.5 | -27 | YP_223952 | 5' arm 3' arm | ||
| 31819 | - | 18694 | 86 | 20.5 | -22.4 | YP_223952 | 5' arm 3' arm | ||
| 31817 | - | 17841 | 86 | 19 | -21.9 | YP_223952 | 5' arm 3' arm | ||
| 31820 | - | 18944 | 88 | 20 | -22.6 | YP_223952 | 5' arm 3' arm | ||
| 31734 | + | 19566 | 86 | 20 | -21.7 | YP_223954 | 5' arm 3' arm | ||
| 31821 | - | 19895 | 90 | 23 | -28 | YP_223954 | 5' arm 3' arm | ||
| 31735 | + | 19880 | 89 | 19 | -22.7 | YP_223954 | 5' arm 3' arm | ||
| 31736 | + | 20187 | 90 | 21.5 | -26 | YP_223954 | 5' arm 3' arm | ||
| 31822 | - | 20341 | 90 | 20 | -29.8 | YP_223955 | 5' arm 3' arm | ||
| 31823 | - | 20856 | 90 | 20 | -22.9 | YP_223956 | 5' arm 3' arm | ||
| 31739 | + | 23253 | 90 | 19.5 | -22.2 | YP_223957 | 5' arm 3' arm | ||
| 31738 | + | 23037 | 90 | 19.5 | -19.4 | YP_223957 | 5' arm 3' arm | ||
| 31828 | - | 22776 | 89 | 20.5 | -20.7 | YP_223957 | 5' arm 3' arm | ||
| 31827 | - | 22508 | 89 | 21 | -20.1 | YP_223957 | 5' arm 3' arm | ||
| 31826 | - | 22046 | 85 | 20 | -22.9 | YP_223957 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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