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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31801 | - | 9063 | 89 | 20 | -28.3 | YP_223938 | 5' arm 3' arm | ||
| 31803 | - | 9768 | 89 | 20.5 | -24.6 | YP_223938 | 5' arm 3' arm | ||
| 31802 | - | 9356 | 89 | 22 | -27.7 | YP_223938 | 5' arm 3' arm | ||
| 31722 | + | 9348 | 88 | 19 | -20 | YP_223938 | 5' arm 3' arm | ||
| 31800 | - | 8921 | 89 | 20.5 | -23.3 | YP_223938 | 5' arm 3' arm | ||
| 31726 | + | 10825 | 87 | 19.5 | -19.7 | YP_223939 | 5' arm 3' arm | ||
| 31805 | - | 10864 | 89 | 21.5 | -23.4 | YP_223939 | 5' arm 3' arm | ||
| 31806 | - | 12113 | 90 | 23 | -20.8 | YP_223942 | 5' arm 3' arm | ||
| 31807 | - | 12545 | 89 | 22.5 | -21.1 | YP_223943 | 5' arm 3' arm | ||
| 31808 | - | 12973 | 89 | 19.5 | -21.9 | YP_223943 | 5' arm 3' arm | ||
| 31727 | + | 12374 | 90 | 24 | -31.5 | YP_223943 | 5' arm 3' arm | ||
| 31809 | - | 13372 | 90 | 20 | -20.4 | YP_223944 | 5' arm 3' arm | ||
| 31810 | - | 14152 | 89 | 20.5 | -20.5 | YP_223946 | 5' arm 3' arm | ||
| 31811 | - | 14387 | 89 | 21.5 | -19.5 | YP_223946 | 5' arm 3' arm | ||
| 31728 | + | 14276 | 90 | 19 | -26.8 | YP_223946 | 5' arm 3' arm | ||
| 31729 | + | 14505 | 89 | 19.5 | -22 | YP_223947 | 5' arm 3' arm | ||
| 31812 | - | 15373 | 88 | 21 | -26 | YP_223948 | 5' arm 3' arm | ||
| 31730 | + | 15810 | 90 | 19.5 | -25.7 | YP_223948 | 5' arm 3' arm | ||
| 31731 | + | 17018 | 89 | 19 | -22.1 | YP_223950 | 5' arm 3' arm | ||
| 31813 | - | 17031 | 88 | 21 | -22.1 | YP_223950 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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