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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31717 | + | 4655 | 90 | 19 | -22.6 | YP_223931 | 5' arm 3' arm | ||
| 31789 | - | 4743 | 87 | 19.5 | -24.9 | YP_223931 | 5' arm 3' arm | ||
| 31788 | - | 4100 | 89 | 25 | -22.1 | YP_223931 | 5' arm 3' arm | ||
| 31791 | - | 5693 | 90 | 20 | -26.1 | YP_223934 | 5' arm 3' arm | ||
| 31792 | - | 6255 | 87 | 22 | -25.6 | YP_223935 | 5' arm 3' arm | ||
| 31718 | + | 6320 | 85 | 21.5 | -30.1 | YP_223935 | 5' arm 3' arm | ||
| 31793 | - | 6446 | 90 | 22 | -21.6 | YP_223935 | 5' arm 3' arm | ||
| 31794 | - | 6587 | 87 | 20.5 | -24.3 | YP_223935 | 5' arm 3' arm | ||
| 31795 | - | 7189 | 90 | 21 | -26.7 | YP_223936 | 5' arm 3' arm | ||
| 31796 | - | 7704 | 87 | 19 | -26.8 | YP_223937 | 5' arm 3' arm | ||
| 31719 | + | 8311 | 90 | 19 | -20.5 | YP_223937 | 5' arm 3' arm | ||
| 31799 | - | 8646 | 89 | 21.5 | -19.7 | YP_223937 | 5' arm 3' arm | ||
| 31798 | - | 8368 | 90 | 21 | -29.5 | YP_223937 | 5' arm 3' arm | ||
| 31720 | + | 8447 | 90 | 20.5 | -24.9 | YP_223937 | 5' arm 3' arm | ||
| 31797 | - | 7799 | 90 | 19 | -20.2 | YP_223937 | 5' arm 3' arm | ||
| 31721 | + | 8559 | 87 | 23 | -23.3 | YP_223937 | 5' arm 3' arm | ||
| 31723 | + | 10057 | 86 | 21 | -22.3 | YP_223938 | 5' arm 3' arm | ||
| 31725 | + | 10369 | 90 | 19.5 | -30 | YP_223938 | 5' arm 3' arm | ||
| 31801 | - | 9063 | 89 | 20 | -28.3 | YP_223938 | 5' arm 3' arm | ||
| 31803 | - | 9768 | 89 | 20.5 | -24.6 | YP_223938 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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